Selected publications

2024

Singh, A. K., Panda, S. K., & Pandey, D. M. (2024). Transcriptome analyses revealed differential gene expression patterns in contrasting rice landraces as a response to acidic or proton toxicity stress. Current Plant Biology, 39, 100368.

Panda, S. K., Gupta, D., Patel, M., Vyver, C. V. D., & Koyama, H. (2024). Functionality of Reactive Oxygen Species (ROS) in Plants: Toxicity and Control in Poaceae Crops Exposed to Abiotic Stress. Plants, 13(15), 2071.

Gupta, D., Saini, A., van der Vyver, C., & Panda, S. K. (2024).

Gene Editing: Paving the Way for Enhancing Plant Tolerance to Abiotic Stresses-Mechanisms, Breakthroughs, and Future Prospects. Journal of Plant Growth Regulation, 1-17.

Regon, P., Saha, B., Jyoti, S. Y., Gupta, D., Kundu, B., Tanti, B., & Panda, S. K. (2024). Transcriptional networks revealed late embryogenesis abundant genes regulating drought mitigation in aromatic Keteki Joha rice. Physiologia Plantarum, 176(3), e14348.

Thounaojam, T.C., Meetei, T.T., Devi, Y.B. et al. Arsenic stress responses in sensitive and tolerant rice of North-East, India. CEREAL RESEARCH COMMUNICATIONS (2024). https://doi.org/10.1007/s42976-023-00488-x

2023

Jarambasa, T., Regon, P., Jyoti, S.Y. et al. Genome-wide identification and expression analysis of the Pisum sativum (L.) APETALA2/ethylene-responsive factor (AP2/ERF) gene family reveals functions in drought and cold stresses. Genetica 151, 225–239 (2023). https://doi.org/10.1007/s10709-023-00190-0 IF-1.633

Patra, Gupta, G.R. Rout, S.K.Panda Role of long non coding RNA in plants under abiotic and biotic stresses

https://doi.org/10.1016/j.plaphy.2022.10.030 (2023) Plant physiology and biochemistry. IF-6.5

Sahoo, S., Kusunoki, K., Goswami, K. et al. Differential Transcriptional Regulation of Drought Stress Revealed by Comparative RNA-seq Analysis of Contrasting indica Rice from North East India. J Plant Growth Regul (2023). https://doi.org/10.1007/s00344-023-10964-7

Shukla, S.S.; Panda, S.K. Nitrogen Use Efficiency Regulates Drought Stress in Pearl Millet Genotypes: Morpho-Physiological Evaluation. Agriculture 2023, 13, 680. https://doi.org/10.3390/agriculture13030680

Manasa, L.S.; Panigrahy, M.; Panigrahi, K.C.; Mishra, G.; Panda, S.K.; Rout, G.R. Cold Tolerance Mechanisms in Mungbean (Vigna radiata L.) Genotypes during Germination. Agriculture 2023, 13, 315. https://doi.org/10.3390/agriculture13020315

2022

Shome, S., Tewari, S., Bhattacharya, M.K. et al. Phytofunctionalized ZnO nanoparticles ameliorate water stress and its recovery in Oryza sativa L.. Acta Physiol Plant 44, 137 (2022). https://doi.org/10.1007/s11738-022-03477-5

Iron deficiency in blackgram (Vigna mungo L.): redox status and antioxidant activity

Sangita Dey, Bhaben Chowardhara, Preetom Regon, Saradia Kar, Bedabrata Saha, Sanjib Kumar Panda

Role of long non coding RNA in plants under abiotic and biotic stresses

Gyanendra K Patra, Divya Gupta, Gyana Ranjan Rout, Sanjib Kumar Panda.,https://doi.org/10.1016/j.plaphy.2022.10.030

Nanoparticles mitigate arsenic stress in plants by modulating defence mechanisms

Thorny Chanu Thounaojam, Zesmin Khan, Thounaojam Thomas Meetei, Sanjib Kumar Panda, Hrishikesh Upadhyaya

Quantitative Analysis of Redox Pool (NAD+, NADH Content) in Plant Samples Under Aluminum Stress

Jay Prakash Awasthi, Bedabrata Saha, Hiroyuki Koyama, Sanjib Kumar Panda

Differential response to acidic pH in rice seedlings

Jay Prakash Awasthi, Bedabrata Saha, Bhaben Chowardhara, Pankaj Borgohain, Smita Sahoo, Bhaben Tanti, Sanjib Kumar Panda

Phytofunctionalized ZnO nanoparticles ameliorate water stress and its recovery in Oryza sativa L.

Soumitra Shome, Sujit Tewari, Mrinal Kanti Bhattacharya, Sanjib Kumar Panda, Hrishikesh Upadhyaya

Liquid Chromatography-Mass Spectrometry (LC/MS) based Metabolomic Fingerprinting in Contrasting Rice Varieties for Iron (Fe) excess.

Saradia Kar., Raj Kishan Agrahari., Emiko Yanase., Yuriko Kobayashi., Hiroyuki Koyama., Sanjib Kumar Panda., Plant stress., https://doi.org/10.1016/j.stress.2022.100078.

Transcriptomic analysis revealed reactive oxygen species scavenging mechanisms associated with ferrous iron toxicity in aromatic Keteki Joha rice.

Regon, P., Dey, S., Rehman, M., Pradhan, A. K., Tanti, B., Talukdar, A. D., & Panda, S. K. (2022).Frontiers Plant Sciences.,https://doi.org/10.1101/2020.05.01.070516., IF-5.753

Effect of ethanol, putresciene and acetic acid on cadmium accumulation and toxicity in Indian mustard.

Chowardhara, B., Saha, B., Borgohain, P., Awasthi, JP., Kitaniya, S., Panda, SK. (2022).

South African Journal of Botany., https://doi.org/10.1016/j.sajb.2021.12.019., IF-2.3

2021

Genome-wide association study identifies POLYGALACTURONASE INHIBITING PROTEIN 1 transcriptional regulation under aluminum stress in Arabidopsis thaliana. Agrahari,R.K.,Kobayashi,Y.,Enomoto,T.,Yanase.E.,Nakano,Y.,Ito,H.,Watanabe,T.,Sadhukhan,A.,Panda,S.K., & Koyama, H. (2021) Frontiers Plant Sciences,https://doi.org/10.3389/fpls.2021.774687., IF-5.753.

Tissue-dependent variation profiles of tea quality-related metabolites in new shoots of tea accessions.
Yamashita, H., Katai, H., Ohnishi, T., Morita, A., *Panda, S. K., & *Ikka, T. (2021). Frontiers in nutrition.,DOI: 10.3389/fnut.2021.659807., IF-6.576

Expression genome-wide association study identifies that phosphatidylinositol-derived signalling regulates ALUMINIUM SENSITIVE3 expression under aluminium stress in the shoots of Arabidopsis thaliana.

Sadhukhan, A., Agrahari, R. K., Wu, L., Watanabe, T., Nakano, Y., Panda, S. K., ... & Kobayashi, Y. (2021).Plant Science.,DOI: 10.1016/j.plantsci.2020.110711.,F- 4.729

Metal ion toxicity and tolerance mechanisms in plants growing in acidic soil.

Kar, S., Agrahari, R. K., & Panda, S. K. (2021). SAINS TANAH-Journal of Soil Science and Agroclimatology, https://dx.doi.org/10.20961/stjssa.v18i1.51254., IF – 1.16

Transporters: the molecular drivers of arsenic stress tolerance in plants.

Thounaojam, T. C., Khan, Z., Meetei, T. T., Srivastava, S., Panda, S. K., & Upadhyaya, H. (2021). Journal of Plant Biochemistry and Biotechnology., DOI: 10.1007/s13562-021-00748-z. IF-1.175

Salinity Stress and Plant Secondary Metabolite Enhancement: An Overview. Biotechnological Approaches to Enhance Saha, B., Chowardhara, B., Awasthi, J. P., Panda, S. K., & Panigrahi, K. C. (2021). Plant Secondary Metabolites, 49-60.,DOI:10.1201/9781003034957-3.

Differential amelioration of cadmium toxicity by sodium nitroprusside and citric acid in Brassica juncea (L.) Czern and Coss.

Chowardhara, B., Saha, B., Borgohain, P., Awasthi, J. P., & Panda, S. K. (2021). Biocatalysis and Agricultural Biotechnology, 35, 102091,DOI: 10.1016/j.bcab.2021.102091 IF- 3.281

Physio-biochemical and molecular assessment of Iron (Fe 2+) toxicity responses in contrasting indigenous aromatic Joha rice cultivars of Assam, India.

Regon, P., Dey, S., Chowardhara, B., Saha, B., Kar, S., Tanti, B., & Panda, S. K. (2021). Protoplasma, 258(2), 289-299. DOI:10.1007/s00709-020-01574-1. IF- 3.356.

Comparative transcriptomics of lowland rice varieties leads to novel candidate genes for adaptive iron excess tolerance.

Kar, S. Mai, H-J.,Khalouf, H., Haithem.,B.,Kurz,S., Fink-Straube, C.,Brautigam, A., Xiong, JG., Shang, L.Panda, S.K. and Bauer, P.. (2021),Plant Cell Physiology., DOI: 10.1093/pcp/pcab018, IF- 4.927.

Zinc oxide nanoparticles (ZnO-NPs): a promising nanoparticle in renovating plant science.

Thounaojam, T. C., Meetei, T. T., Devi, Y. B., Panda, S. K., & Upadhyaya, H. (2021).Acta Physiologiae Plantarum, 43(10),DOI- 10.1007/s11738-021-03307-0, IF- 2.28.

Genome-wide analysis of fluoride exporter genes in plants.
Agarwal,S., Regon, P.,Rehman, M., Tanti, B. and Panda, S.K. (2021) 3 Biotech. DOI- 10.1007/s13205-021-02677-z IF-2.406

Smart fertilizer management: the progress of imaging technologies and possible implementation of plant biomarkers in agriculture.

Agrahari, R.K., Kobayashi, Y.,Tanaka, TST, Panda, S.K. and Koyama, H. (2021) Soil Science Plant Nutr. DOI: 10.1080/00380768.2021.1897479, IF-3.573.

Comparative RNA-Seq analysis of the root revealed transcriptional regulation system for aluminum tolerance in contrasting indica rice of North East India.

Awasthi, J., Kusunoki, K., Saha, B., Kobayashi, Y., Koyama, H. and Panda, S.K. (2021) Protoplasma., DOI: 10.1007/s00709-020-01581-2, IF-3.356.

The SlNAC2 transcription factor from tomato confers tolerance to drought stress in transgenic tobacco plants.

van Beek, C.R., Guzha,T., Kopana,N., van der Westhuizen,C.S., Panda, S.K. and van der Vyver,C.V.D. (2021) Physiol. & Mo.Biol. Plants., DOI: 10.1007/s12298-021-00996-2, IF-2.391.

Iron deficiency in blackgram (Vigna mungo L.): redox status and antioxidant activity.

Sangita Dey, Bhaben Chowardhara, Preetom Regon, Saradia Kar, Bedabrata Saha & Sanjib Kumar Panda (2021)Plant Biosystems., https://doi.org/10.1080/11263504.2020.1866093, IF-2.838.

2020

Exogenous trehalose ameliorates methyl viologen induced oxidative stress through regulation of stomatal pore opening and glutathione metabolism in tomato seedlings.

P Borgohain, B Chowardhara, B Saha, JP Awasthi, P Regon, S Sahoo, ...

Vegetos, IF – 0.47 DOI: 10.1007/s42535-020-00155-0 .

Aluminum-Specific Upregulation of GmALS3 in the Shoots of Soybeans: A Potential Biomarker for Managing Soybean Production in Acidic Soil Regions.

RK Agrahari, Y Kobayashi, P Borgohain, SK Panda, H Koyama

Agronomy 10 (9)., https://doi.org/10.3390/agronomy10091228.

Chelators of iron and their role in plant’s iron management.

S Dey, P Regon, S Kar, SK Panda

Physiology and Molecular Biology of Plants., https://dx.doi.org/10.1007%2Fs12298-020-00841-y.

Differential oxidative stress responses in Brassica juncea (L.) Czern and Coss cultivars induced by cadmium at germination and early seedling stage.

B Chowardhara, P Borgohain, B Saha, JP Awasthi, SK Panda

Acta Physiologiae Plantarum 42., https://doi.org/10.1007/s11738-020-03094-0 .

Enhanced exudation of malate in the rhizosphere due to AtALMT1 overexpression in blackgram (Vigna mungo L.) confers increased aluminium tolerance.

B Saha, D Swain, P Borgohain, GR Rout, H Koyama, SK Panda

Plant Biology.,doi: 10.1111/plb.13112.

2019

SlNAC2 overexpression in Arabidopsis results in enhanced abiotic stress tolerance with alteration in glutathione metabolism.

P Borgohain, B Saha, R Agrahari, B Chowardhara, S Sahoo,

Protoplasma 256 (4).,doi: 10.1007/s00709-019-01368-0.

Redox balance, metabolic fingerprint and physiological characterization in contrasting North East Indian rice for Aluminum stress tolerance.

JP Awasthi, B Saha, J Panigrahi, E Yanase, H Koyama, SK Panda

Scientific reports 9 (1)., https://doi.org/10.1038/s41598-019-45158-3.

Genome-wide analysis of magnesium transporter genes in Solanum lycopersicum.

P Regon, U Chowra, JP Awasthi, P Borgohain, SK Panda

Computational biology and chemistry 80.,https://doi.org/10.1016/j.compbiolchem.2019.05.014.

Physiological introspection into differential drought tolerance in rice cultivars of North East India.

S Sahoo, B Saha, JP Awasthi, T Omisun, P Borgohain, S Hussain, ...

Acta Physiologiae Plantarum 41 (4), IF-2.28

Identification and characterization of drought responsive miRNAs in a drought tolerant upland rice cultivar KMJ 1-12-3.

JP Awasthi, T Chandra, S Mishra, S Parmar, BP Shaw, PD Nilawe, ..

Plant Physiology and Biochemistry 137, 62-74, IF- 4.27

Comparative transcriptome and translatome analysis in contrasting rice genotypes reveals differential mRNA translation in salt-tolerant Pokkali under salt stress.

YF Li, Y Zheng, LR Vemireddy, SK Panda, S Jose, A Ranjan, P Panda.

BMC genomics 19 (10), 935